Instructor |
|
| John Galeotti | galeotti+miia ATcs.cmu.edu |
Teaching Assistants |
|
Vikas R.S. |
vir16+miia ATpitt.edu |
“Jackie” Chen |
kuanchic+miia ATandrew.cmu.edu |
We comply with both the U. Pitt. and CMU calendars. Lectures are Tuesday and Thursday from 10:30-11:45 AM, in GHC 5222, Carnegie Mellon University.
Shadow Program: 5-8 sessions, 8:30-9:30 AM weekday mornings (and possibly other times optional for shadowing pathology).
Online schedule (same password) and directions. Reports should be emailed to Jackie and Galeotti.
Last Year's Website has been archived.
Note about videos: Be sure to download the videos (right-click the video's link then select either "download" or "save-as") rather than try to watch them in your browser. Please let me know if you notice any problems or video content that should be either fixed or trimmed out if it's not relevant to a general audiance (please reference the 2012 lecture number and the playing time into the video at which the problem occurs).
| Week # | Date | Updated for 2012? | Material | Video and .pptx files |
|---|---|---|---|---|
Week 1 |
Tu 1/17 |
Y | Lecture 1: Introductions, purpose, Syllabus |
Power Point Video |
Th 1/19 |
Y | Lecture 2: Programming background: C++ & Python | Power Point Video |
|
Week 2 |
Tu 1/24 |
Y | Lecture 3: Math & probability background |
Power Point Video |
Th 1/26 |
Y | Lecture 4: ITK background & basic usage (& imaging modalities?) Assignment #2 given CMU's add/drop-with-refund period ends on 27th (tomorrow) |
Power Point Video |
|
Week 3 |
Tu 1/31 |
Y | Lecture 5: Image characterization |
Power Point Video |
Th 2/2 |
Y | Lecture 6: Linear processing Quiz #3 on Snyder 5.1-5.6,5.8-5A (through page 101, but skip 5.7) Take-home quiz #4 assigned - due in class on 2/9. |
Power Point Video |
|
Week 4 |
Tu 2/7 |
Y | Lecture 7: Image relaxation: restoration & feature extraction |
Power Point Video |
Th 2/9 |
Y | Lecture 8: ITK registration |
Power Point Video |
|
Week 5 |
Tu 2/14 |
Y | Lecture 9: Segmentation, part 1 |
Power Point Video |
Th 2/16 |
Y | Lecture 10: Segmentation, part 2 (continue using lecture 9 notes, start with segmentation by thresholding) | Video | |
Week 6 |
Tu 2/21 |
Y | Lecture 11: Segmentation, part 3 (active contours) |
Power Point Video |
Th 2/23 |
Y | Lecture 12: Level set segmentations & (briefly begin) parametric transforms (Snyder 8.5.2 & Snyder 11.1-11.6) [not required, but recommended: Insight into Images ch 8] Quiz on Snyder 11.1-11.6 |
Power Point Video |
|
Week 7 |
Tu 2/28 |
Y | Lecture 13: Shape (& finish parametric transforms) |
Power Point Video |
Th 3/1 |
Y | Lecture 14: Mathematical morphology & (briefly begin) image matching |
Power Point 1 Power Point 2 Video |
|
Pitt Spring Break |
3/6 - 3/8 |
No Lectures |
||
CMU Spring Break |
3/13 - 3/15 |
No Lectures | ||
Week 8 |
Tu 3/20 |
Y | Lecture 15: ITK images & iterators Assignment #3 given: Segmentation and pre-processing |
|
Th 3/22 |
Y | Lecture 16: ITK pipeline, including connecting to SimpleITK (and possibly Imaging Modalities also) |
Power Point Video |
|
Week 9 |
Tu 3/27 |
Y | Lecture 17: ITK filters: how to write them (neighborhoods & numeric traits) | Power Point Video |
Th 3/29 |
Y | Lecture 18: ITK filters, part 2 (advanced filter creation & misc. tools) CMU's drop-without-withdrawl period ends on 30th (tomorrow) |
Power Point Video |
|
Week 10 |
Tu 4/3 |
Y | Lecture 19: Registration in depth (Insight into Images ch 10 + Viola & Wells) |
Power Point Video |
Th 4/5 |
Y | Lecture 20: Deformable registration & Imaging Modalities |
||
Week 11 |
Tu 4/10 |
Y | Lecture 21: ITK Paths | Power Point Video |
Th 4/12 |
Y | Lecture 22: ITK and open source software development philosophy, and Visualization | Power Point Video |
|
Week 12 |
Tu 4/17 |
Y | Project working session--bring your laptops--attendance optional. |
|
Th 4/19 |
No Lecture - CMU Spring Carnival | |||
Week 13 |
Tu 4/24 |
Student project presentations (schedule) (Each presentation must be between 4.5 - 5.5 minutes long.) Everyone's power-point slides due by 10 AM today! |
||
Th 4/26 |
Student project presentations & Projects Due | |||
Week 14 |
Tu 5/1 |
Pitt not in session | ||
Th 5/3 |
Pitt not in session | |||
Remaining Lecture Fragments: |
Lecture 7 GNC onward (when did I tack this on?), Lecture 14 Image Matching | |||
Potential Lectures: |
||||
| Guest Lecture: MRI/DTI (see also brain anatomy and the fiber track image gallery) | ||||
| Itk Video (w/ OpenCV?) | ||||
| Cootes and Taylor ASM (assuming part of ITKv4) (Cootes CVIU 1995) (based on 2008 guest lecture by Ken Urish) | ||||
Neuropathology Directions have been emailed; Email your instructor now if you did not get them. |
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